From the category archives:

Science

Artificial Meat

by Jon Mandle on November 30, 2009

I don’t know how I missed the breakthrough in fish stick technology mentioned so casually in this article from the Sunday Times:

SCIENTISTS have grown meat in the laboratory for the first time. Experts in Holland used cells from a live pig to replicate growth in a petri dish.
The advent of so-called “in-vitro” or cultured meat could reduce the billions of tons of greenhouse gases emitted each year by farm animals — if people are willing to eat it.
So far the scientists have not tasted it, but they believe the breakthrough could lead to sausages and other processed products being made from laboratory meat in as little as five years’ time.
They initially extracted cells from the muscle of a live pig. Called myoblasts, these cells are programmed to grow into muscle and repair damage in animals.
The cells were then incubated in a solution containing nutrients to encourage them to multiply indefinitely. This nutritious “broth” is derived from the blood products of animal foetuses, although the intention is to come up with a synthetic solution.

The Dutch experiments follow the creation of “fish fillets” derived from goldfish muscle cells in New York and pave the way for laboratory-grown chicken, beef and lamb.

The Vegetarian Society reacted cautiously yesterday, saying: “The big question is how could you guarantee you were eating artificial flesh rather than flesh from an animal that had been slaughtered. It would be very difficult to label and identify in a way that people would trust.” Peta, the animal rights group, said: “As far as we’re concerned, if meat is no longer a piece of a dead animal there’s no ethical objection.”

That’s the “big question”? I’m guessing that Dr. Kass will find this even more repugnant than the public licking of an ice cream cone.

Chicken Little

by Henry Farrell on November 10, 2009

Paul Krugman links to an “excellent take-down”:http://www.newyorker.com/arts/critics/books/2009/11/16/091116crbo_books_kolbert?currentPage=all by Elizabeth Kolbert of the notorious climate change chapter in _Superfreakonomics._

what’s most troubling about “SuperFreakonomics” isn’t the authors’ many blunders; it’s the whole spirit of the enterprise. Though climate change is a grave problem, Levitt and Dubner treat it mainly as an opportunity to show how clever they are. Leaving aside the question of whether geoengineering, as it is known in scientific circles, is even possible—have you ever tried sending an eighteen-mile-long hose into the stratosphere?—their analysis is terrifyingly cavalier. A world whose atmosphere is loaded with carbon dioxide, on the one hand, and sulfur dioxide, on the other, would be a fundamentally different place from the earth as we know it. Among the many likely consequences of shooting SO2 above the clouds would be new regional weather patterns (after major volcanic eruptions, Asia and Africa have a nasty tendency to experience drought), ozone depletion, and increased acid rain.

Kolbert’s closing words are, however, a little unfair.

To be skeptical of climate models and credulous about things like carbon-eating trees and cloudmaking machinery and hoses that shoot sulfur into the sky is to replace a faith in science with a belief in science fiction. This is the turn that “SuperFreakonomics” takes, even as its authors repeatedly extoll their hard-headedness. All of which goes to show that, while some forms of horseshit are no longer a problem, others will always be with us.

Not unfair to Levitt and Dubner, mind you, but to science fiction. After all, two science fiction authors, Frederik Pohl and Cyril Kornbluth, had their number down way back in 1953 with _The Space Merchants_ (Pohl, amazingly, is still alive and active).

The Conservationists were fair game, those wild eyed zealots who pretended modern civilization was in some way “plundering” our planet. Preposterous stuff. Science is _always_ a step ahead of the failure of natural resources. After all, when real meat got scarce, we had soyaburgers ready. When oil ran low, technology developed the pedicab.

I missed out on the book title contest a while back, so here’s my entry. As regards earnestness, i’m riffing off Andrew Gelman, via Kieran, who observes “”pissing off conservatives” is boring and earnest?”

The main point, though, is that the fuss over the global cooling chapter in Levitt and Dubner’s new book is the first occasion, I think, where the refutation of specific errors has taken a back seat (partly because, in this case, it’s so easy) to an attack on contrarianism, as such. The general point is that contrarianism is a cheap way of allowing ideological hacks to think of themselves as fearless, independent thinkers, while never challenging (in fact reinforcing) the status quo. Here’s Krugman and Joe Romm, for example

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Looking at Data

by Kieran Healy on October 13, 2009

Jeremy Freese is doing some analysis:

So, the General Social Survey reinterviewed a large subset of 2006 respondents in 2008. They have released the data that combines into one file the respondents interviewed for the first time in 2008 and the 2008 reinterviews of the respondents originally interviewed in 2006. In a separate file, of course, you can get the original 2006 interviews for the latter people.

What has not yet been released, however, is the variable that would identify what row in the first file corresponds to what row in the second file. In other words, you know that person #438 in the reinterview data is somebody originally interviewed in 2006, but you don’t know what person in the 2006 data there are.

Well, especially because the last thing I need to be doing right now is procrastinating, that sounded like a challenge. Just as I have learned that just because there are no microwave instructions for a frozen dinner doesn’t mean you can’t microwave it, just because there isn’t a merge variable doesn’t mean you can’t merge the data. At least if no secure data agreement is involved.

All I have to say is: holy crap. You’d think knowing somebody’s sex, survey ballot (which was kept the same both times), zodiac sign, year of birth, self-identified race, region where they lived where they were 16, whether they lived with their parents when they were 16, whether they lived in the same place they did growing up, who they said they voted for in 2004, their marital status, their education, what they say they did for a living, how many years their mother went to school, inter alia, would allow you to pretty easily pinpoint who is who. I am here to tell you this is not the case.

I was able to devise some convoluted scheme and check how well it was doing thanks to a pretty big clue that I’ll refrain from posting, but even then there ended up being 50 cases that out of 1500 that I wasn’t sure who they were. In general the experience affirmed a fundamental suspicion I’ve had about analyzing survey data: the data seem so much less real once you ask the same person the same question twice.

The real distinction between qualitative and quantitative is not widely appreciated. People think it has something to do with counting versus not counting, but this is a mistake. If the interpretive work necessary to make sense of things is immediately obvious to everyone, it’s qualitative data. If the interpretative work you need to do is immediately obvious only to experts, it’s quantitative data.

Reality Thursday

by John Holbo on October 1, 2009

I don’t see why only Theory and Monday should have all the fun. Still, one comment from Michael’s thread caught my eye. Hidari:

I might also add that the ‘anti-relativist’ or (as I would prefer to put it) ‘anti-contextualist’ position is generally hopelessly confused in that they tend to use Positivist arguments to support Realist positions. But you can’t do that. The positivists were instrumentalists, as befitted their anti-metaphysical, pro-empiricist assumptions. Realism is a metaphysical position.

The rest of the comment suggests this is supposed to express a Nancy Cartwright-style view, which I don’t think is really quite properly described as anti-realist. (It is anti-Realist, for certain values of the self-important capital-R. But that is another kettle of fish. Or, possibly, Fish. I mention this out of scrupulosity because it just isn’t clear to me the positions Hidari is objecting to in the thread are Realist, as opposed to realist.) Anyway, the point is this. I’ve been watching the new They Might Be Giants Here Comes Science DVD with my girls [amazon]. It’s great! Can’t decide yet whether I like it better than the earlier TMBG kid’s discs, but it does measure up so far.

In the opening number, one of the Johns does exactly the thing that bothers Hidari (and Cartwright is indeed someone who scourges this particular move): offering positivist arguments on behalf of realism.

As I was saying, one of the Johns quotes Rudolf Carnap, “science is a system of statements based on direct experience and controlled by experimental verification.” And the other John then says: “Or as we say, Science Is Real!” And the song starts. But these two statements are hardly equivalent. Indeed, even the graphic for the song title is eloquently anti-Carnapian:

sciencereal

This clearly implies that science does not consist of sentences. It is a thing that itself contains the things that sentences about science are about. Or as we say: things! Reality! (Call it what you will. Place is thick with the stuff.)

Here’s a YouTube link to the video for TMBG “Science is Real”, complete with Carnapian intro. (You can also watch it as an Amazon preview, but they cut the Carnap bit! That was the best part!)

So your job, this Reality Thursday, is to write a song – or poem – expressing as clearly as you can, with extra style points for keeping it intelligible to an 8-year old – your favored philosophy of science. Does it consist of sentences, or does it consist of reality? You decide! The only thing I can think of that rhymes with ‘paradigm’ is ‘spare a dime’. As to the rest: I’m recovering from the flu myself and have 100+ papers to grade, so don’t ask me to dance you a little jig. I don’t have the time or energy.

You can also comment in prose.

What global warming looks like

by Chris Bertram on September 25, 2009

Some amazing time lapse sequences of glacier retreat and a spectacular ice-shelf collapse:

Is this the same Steven Pinker?

by John Q on August 5, 2009

Over at my blog a couple of days ago, we were discussing Steven Pinker’s The Blank Slate, a book which I thought, when I reviewed it in 2002, was much below the standard of his earlier work, though no worse than the average book about the ‘nature-nurture’ controversy. In particular, I thought his discussion of war and violence was hopelessly confused, putting forward a Hobbesian view of violence as the product of rational self interest as if it was consistent with the genetic determinism that was the central theme of the rest of the book.

Now, via John Horgan at Slate, I’ve happened across this broadcast by Pinker at TED (which, by the way I’ve just discovered and is excellent). The broadcast has a transcript which is great for those of us who prefer reading to listening.

In this piece, Pinker appears to me to change sides almsot completely, from pessimist to optimist and from genetic determinist to social improver. Not only does he present evidence that war and violence are declining in relative importance, his explanation for this seems to be entirely consistent with the Standard Social Science Model he caricatured and debunked in The Blank Slate. He’s still got a sort of rational self-interest model in there, but now Hobbes is invoked, not for his ‘nasty, brutish and short’ state of nature, but for his argument that the Leviathan of social order will suppress violence to the benefit of all.

But even more striking is this:

[Co-operation] may also be powered by cosmopolitanism: by histories and journalism and memoirs and realistic fiction and travel and literacy, which allows you to project yourself into the lives of other people that formerly you may have treated as sub-human, and also to realize the accidental contingency of your own station in life; the sense that “there but for fortune go I.”

I agree entirely, but we seem to have come a long way from the African savannah here.

Meanwhile, in the libel courts…

by Harry on June 4, 2009

…Simon Singh is appealing the finding that he libeled the British Chiropractor Association by denying that chiropracticionariness is evidence-based medicine. (More details here). (Beware, Daniel — you’ll have the scientists suing you if you’re not careful). Fortunately, he has the greatest living Englishman on his side, so there is some hope that justice will be done.

The news that NICE has put acupuncture and chiropractic on the list of approved therapies for non-specific lower back pain has led to about the reactions you’d expect – back-slapping and high-fiving from the crystals and “life force” crowd, agonised complaining from the professional skeptics. But it’s actually a sign of something that ought to make us worry, not much but at least a little bit, about the way in which we’re doing medical science in this country.
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Biology and Breeding

by John Holbo on May 30, 2009

Hey, you know those psychedelic bio text images I posted about? Well, someone took an interest in the post and the images and went and did a bit of research on the textbook itself: [click to continue…]

Yuck!

by Henry Farrell on May 19, 2009

Via “P.Z.”:http://scienceblogs.com/pharyngula/2009/05/chest_bursters.php (but put under the fold so as to protect the delicate sensibilities of CT’s readership).
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So I clicked over to Pharyngula to see whether PZ had blown his top about the Fish thing (see previous post). Yes! In a manner of speaking.

I feel the need to cheer poor PZ up. So: the coolest thing on Flickr is this set of scans from a 1972 biology textbook that so desperately wanted to be a prog rock concept album. You should also read the tart commentary by the guy who posted it.

I thought about posting a few of the images here but I think, for full effect, you just need to view the whole set. (Just like you can’t really explain to someone why a particular Yes album is great by playing only 10 seconds of it.)

Making a hash of it

by Henry Farrell on April 7, 2009

“Julian Sanchez”:http://www.juliansanchez.com/2009/04/06/climate-change-and-argumentative-fallacies/ on climate change debates.

Sometimes, of course, the arguments are such that the specialists can develop and summarize them to the point that an intelligent layman can evaluate them. But often—and I feel pretty sure here—that’s just not the case. Give me a topic I know fairly intimately, and I can often make a convincing case for absolute horseshit. Convincing, at any rate, to an ordinary educated person with only passing acquaintance with the topic. A specialist would surely see through it, but in an argument between us, the lay observer wouldn’t necessarily be able to tell which of us really had the better case on the basis of the arguments alone—at least not without putting in the time to become something of a specialist himself. Actually, I have a plausible advantage here as a peddler of horseshit: I need only worry about what sounds plausible. If my opponent is trying to explain what’s true, he may be constrained to introduce concepts that take a while to explain and are hard to follow, trying the patience (and perhaps wounding the ego) of the audience.

Come to think of it, there’s a certain class of rhetoric I’m going to call the “one way hash” argument. Most modern cryptographic systems in wide use are based on a certain mathematical asymmetry: You can multiply a couple of large prime numbers much (much, much, much, much) more quickly than you can factor the product back into primes. Certain bad arguments work the same way—skim online debates between biologists and earnest ID afficionados armed with talking points if you want a few examples: The talking point on one side is just complex enough that it’s both intelligible—even somewhat intuitive—to the layman and sounds as though it might qualify as some kind of insight. (If it seems too obvious, perhaps paradoxically, we’ll tend to assume everyone on the other side thought of it themselves and had some good reason to reject it.) The rebuttal, by contrast, may require explaining a whole series of preliminary concepts before it’s really possible to explain why the talking point is wrong. So the setup is “snappy, intuitively appealing argument without obvious problems” vs. “rebuttal I probably don’t have time to read, let alone analyze closely.”

This is both true and smart (as is Julian’s work more generally; in my opinion, he is by far the most consistently interesting and intelligent of the young sort-of-libertarian opinion journalist set).

Time after time

by Michael Bérubé on March 11, 2009

Rev. of Sean Carroll, <i>From Eternity to Here:  The Origin of the Universe and the Arrow of Time</i>.  Forthcoming from Dutton (Penguin), 2009.

Time just isn’t what it used to be.  And space has gotten to be a bit of a problem, as well.  When I was a lad, physicists told me that they had these things pretty well figured out: they had discovered material evidence of the Big Bang, they had adjusted their conception of the age and evolution of the universe accordingly, and, having recalculated the universe’s rate of expansion (after Hubble’s disastrous miscalculations threw the field into disarray), they were working on the problem of trying to figure out whether the whole thing would keep expanding forever or would eventually slow down and snap back in a Big Crunch.  The key, they said, lay in finding all the “missing mass” that would enable a Big Crunch to occur, because at the time it looked as if we only had two or three percent of the stuff it would take to bring it all back home.  When I asked them why a Big Crunch, and a cyclical universe, should be preferable to a universe that just keeps going and going, they told me that the idea of a cyclical eternity was more pleasing and comfortable than the idea of a one-off event; and when I asked them what came before the Big Bang, they patted my head and told me that because the Big Bang initiated all space and time, there was no such thing as “before the Big Bang.”

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Hormones for toy choice

by Chris Bertram on December 10, 2008

From “an otherwise serious article”:http://www.independent.co.uk/news/science/its-official-men-really-are-the-weaker-sex-1055688.html about the effects of pollution on males of all species:

bq. … a study at Rotterdam’s Erasmus University showed that boys whose mothers had been exposed to PCBs grew up wanting to play with dolls and tea sets rather than with traditionally male toys.